1. T. Ge, K. Kendrick, J.F. Feng. A Unified Dynamic and Granger Causal Model Approach Demonstrates Brain Hemispheric Differences During Face Recognition Learning. PLoS Comp. Biol., (under revision), 2009.

2. X.J. Zhang, G. Leng, J.F. Feng. Coherent Peptide-mediated Brain Activities of Neuronal Networks Controlled by Subcellular Signaling Pathway: Experimental and Modelling Results. J. Biotechnology(invited), 2009.

3. W. Lin, H.F. Ma, J.F. Feng, G.R. Chen. Stabilization of unstable periodic orbits through adaptively time-varying delayed feedback control (under revision), 2009.

4. J.H. Wu, J.L. Sinfield, J.F. Feng. Impact of Environmental Inputs on Reverse-Engineering Approach to Network Structures. BMC Systems Biology (under revision, **=co-first author), 2009.

5. C. Ladroue, S.X. Guo, K. Kendrick, J.F. Feng. Beyond element-wise interactions: defining group-to-group interactions for biological processes. PLoS One (accepted, **=co-first author), 2009.

6. C.L. Zou, K.M. Kendrick, J.F. Feng. The Fourth Way: Granger Causality is better than the three other Reverse-engineering Approaches Cell, vol. 137: 172-181, 2009., COMMENTS ON Cell, 3 April 2009, A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches.

7. I. Ashmole, D.V. Vavoulis, P.J. Stansfeld, J.F. Feng, M.J. Sutcliffe, P.R. Stanfield. The response of the tandem pore potassium channel TASK-3 (K2P9.1) to voltage: gating at the cytoplasmic mouth. J. Physiology, 2009.

8. K.M. Kendrick, Y. Zhan, H. Fischer, A.U. Nicol, X.J. Zhang, J.F. Feng. Learning alters theta-nested gamma oscillations in inferotemporal cortex. Nature Precedings hdl: 10101/ npre. 2009.3151.1.

9. C.L. Zou, J.F. Feng. Granger causality vs. Dynamic Bayesian network inference: A Comparative Study. BMC Bioinformatics, vol. 10:122 doi:10.1186/1471-2105-10-122. ( most viewed paper in past 30 days in the journal, flagged as 'highly accessed paper'), 2009.

10. J.F.  Feng , D.Y. Yi, R. Krishna, S.X. Guo, V. Buchanan-Wollaston. Listen to genes: dealing with microarray data in the frequency domain. PLoS One 4(4): e5098. doi: 10.1371 / journal.pone. 0005098, 2009.

11. X.J. Zhang, G.Q. You, T.P. Chen, J.F.  Feng. Readout of spike waves in a microcolumn. Neural Computation (accepted, IF=2.2), 2009.

12. Y.Q. Li , P. Namburi, Z.L. Yu, C.T. Guan, J.F. Feng, Z.H. Gu. Voxel selection in fMRI data analysis based on sparese representation. IEEE T. Biomedical Engineering (accepted, IF=1.6), 2009.

13. B. Yang, J.M. Liu, J.F. Feng, D.Y. Liu. On the spectral characterization and scalable mining of network communities. IEEE T. Knowledge and Data Engineering (under revision, IF=1.9), 2009.

14. J.F. Feng, M. Shcherbina, B. Tirozzi. Stability of the dynamics of an asymmetric neural network. Commun. on Pure and Applied Analysis, vol. 9: 655-671, 2009.

15. E. Rossoni, J. Kang, J.F.  Feng. Controlling precise movement with stochastic signals, (submitted), 2009.

16. Kang J, Robinson HPC, and Feng JF. Diversity of Intrinsic Frequency Encoding Patterns in Rat Cortical Neurons—Mechanisms and Possible Functions. PLoS One, 5(3): e9608, 2010.

 

17. Kang J and Wu JH, Smerieri A, and Feng JF. Weber’s Law Implies Neural Discharge More Regular than a Poisson Process. Eur. J. Neurosci., 36: 1006—1018, 2010.

 

林伟

1.     Wei Lin, Huanfei Ma, Jianfeng Feng, and Guanrong Chen [2010] Locating Unstable Periodic Orbits: When adaptation integrates into Delayed Feedback Control, Physical Review E, vol. 82, Art. No. 046214 (入选由APS, AIP等联合主办的Virtual Journal of Biological Physics Research, Nov. 1, 2010, see: http://www.vjbio.org ).
2.   Wei Lin and Huanfei Ma [2010] Synchronization between Adaptively Coupled Systems with Discrete and Distributed Time-Delays, IEEE Transactions on Automatic Control, Regular Paper, Vol. 55, pp.819.
3 .      Wei Lin [2010] Comment on “Adaptive Steady-State Stabilization for Nonlinear Dynamical Systems”, Physical Review E, vol. 81, Art. No. 038201.
4 .    Huanfei Ma, Bing Xu, Wei Lin＊,  and Jianfeng Feng [2010] Adaptive Identification of Time-delays in Nonlinear Dynamical Models, Physical Review E, Accepted.
5 .    Kunquan Lan and Wei Lin [2010] Multiple Positive Solutions of Systems of Hammerstein Integral Equations with Applications to Fractional Differential Equations, Journal of the London Mathematical Society, Accepted (see: www.lms.ac.uk/publications/journal/forthcoming.html).
6.       Andreas W.M. Dress and Wei Lin [2010] Dynamics of A Discrete-time Model of An “Ideal-storage” System Describing Hetero-catalytic Processes on Metal Surfaces, International Journal of Bifurcation and Chaos, Accepted.
7.     Wenyong Zhong and Wei Lin＊ [2010] Nonlocal and Multiple-point Boundary Value Problem for Fractional Differential Equations, Computers and Mathematics with Applications, vol. 59, pp.1345.
8.     Wei Lin and Guanrong Chen [2009] Large Memory Capacity in Chaotic Artificial Neural Networks: A View of the Anti-Integrable Limit, IEEE Transactions on Neural Networks, Regular Paper, vol. 20, pp.1340.
9.      Wenyong Zhong and Wei Lin＊ [2009] Existence of Positive Solutions in Generalized Boundary Value Problem for p-Laplacian Dynamic Equations on Time Scales, Advances in Difference Equations, vol. 2009, Art. ID 848191.
10.    Huanfei Ma and Wei Lin＊ [2009] Nonlinear Adaptive Synchronization Rule for Identification of A Large Amount of Parameters in Dynamical Models, Physics Letters A, vol. 374, pp.161.
11.   Wei Lin [2008] Realization of Synchronization in Time-Delayed Systems with Stochastic Perturbation, Journal of Physics A: Mathematical and Theoretical, vol. 41, Art. No. 235101.
12.    Qing Ding and Wei Lin [2008] The Transmission Property of the Discrete Heisenberg Ferromagnetic Spin Chain, Journal of Mathematical Physics, vol. 49, Art. No. 093501.
13.    Wei Lin [2008] Chaos Control and Synchronization in Only Locally Lipschitz Systems, Physics Letters A, vol. 372, pp.3195.
14.    Wei Lin and Huanfei Ma [2007] Failure of Parameter Identification Based on Adaptive Synchronization Techniques, Physical Review E, vol. 75, Art. No. 066212.
15.    Wei Lin, Jianhong Wu, and Guanrong Chen [2007] Generalized Snap-Back Repeller and Semi-Conjugacy to Shift Operators of Piecewise Continuous Transformations, Discrete and Continuous Dynamical Systems-Series A, vol.19, pp.103.
16.    Wei Lin [2007] Global Existence Theory and Chaos Control of Fractional Differential Equations, Journal of Mathematical Analysis and Applications, vol. 332, pp.709.
17.    Zhang Chen, Wei Lin＊, and Jie Zhou [2007] Complete and Generalized Synchronization in a Class of Noise Perturbed Chaotic Systems, CHAOS, vol. 17, Art. No. 023106.
18.    Wei Lin and Guanrong Chen [2006] Using White Noise to Enhance Synchronization of Coupled Chaotic Systems, CHAOS, vol.16, Art. No. 013134.
19.    Wei Lin and Guanrong Chen [2006], Heteroclinical Repellers Imply Chaos, International Journal of Bifurcation and Chaos, vol.16, pp.1471.
20.    Wei Lin and Yangbo He [2005] Complete Synchronization of the Noise-Perturbed Chua's Circuits, CHAOS, vol. 15, Art. No. 023705.
21.    沈自尹、张新民、林 伟等，基于基因表达谱数据建立肾虚证量化数学模型，《中国中西医结合杂志》，卷28，期2, 页131, 2008年.

 陈天平

1. Wei Wu, Tianping Chen. Partial synchronization in linearly and symmetrically coupled ordinary differential systems. Physica D, 238(4):355-364, 2009.

 

2.      Wei Wu, Wenjuan Zhou, and Tianping Chen. Cluster Synchronization of Linearly Coupled Complex Networks Under Pinning Control. IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS—I: REGULAR PAPERS, 56,( 4): 829--939, 2009.

 

3. Xiwei Liu, Tianping Chen, Wenlian Lu. Consensus problem in directed networks of multi-agents via nonlinear protocols. Physics Letters A, 373(35): 3122–3127, 2009

 

卢文联

1.      Wenlian Lu and Jun Wang. Convergence Analysis of a Class of Nonsmooth Gradient Systems. IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS—I: REGULAR PAPERS, 55(11):3514-3527,2008.

2. Wenlian Lu, Xiang Li, and Zhihai Rong. Global Stabilization of Complex Networks with Digraph Topologies via a Local Pinning Algorithm. Automatica,2009 (accepted).

3. Wenlian Lu and Tianping Chen. Synchronization in complex networks of coupled systems with directed topologies. International Journal of Systems Science,2009 (In press).

4. Lu WL, Rossoni E, and Feng JF. On a Gaussian neuronal field model. NeuroImage, doi:10.1016/j.neuroimage (in press), 2010.

 

葛颢

1. H. Ge, D.Q. Jiang and M. Qian. A simple discrete model of Brownian motors: time-periodic Markov chains. J. Stat. Phys., 123(4):831-859,2006.

2. H. Ge, D.Q. Jiang and M. Qian. Reversibility and entropy production of inhomogeneous Markov chains. J. Appl. Prob.,43(4):1028-1043,2006.

3. H. Ge and M. Qian. Reversibility and potentiality of exclusion processes on countable discrete groups. Appl. Math. Lett., 20:1110-1114,2007.

4. H. Ge and M. Qian. Generalized Jarzynski’s equality in inhomogeneous Markov chains. J. Math. Phys., 48 053302, 2007

5. H. Ge and D.Q. Jiang. Transient fluctuation theorem of sample entropy production for general stochastic processes. J. Phys. A, 40 F713-F723, 2007.

6. H. Ge, H. Qian and M. Qian. Synchronized dynamics and nonequilibrium steady states in a yeast cell-cycle network. Math. Biosci., 211:132-152,2008.


7. H. Ge. Waiting cycle times and generalized Haldane equality in the steady-state cycle kinetics of single enzymes. J. Phys. Chem. B, 112:61-70,2008.

8. H. Ge and D.Q. Jiang. Generalized Jarzynski’s equality of multidimensional inhomogeneous diffusion processes. J. Stat. Phys., 131:675-689,2008.

9. H. Ge and M. Qian. Steady-state cycle kinetics of single enzymes: competing substrates and multi-conformations. J. Theor. Comput. Chem., 7(5): 1001-1027, 2008

10.H. Ge and M. Qian. Sensitivity amplification in the phosphorylation-dephosphorylation cycle: nonequilibrium steady states, chemical master equation and temporal cooperativity.   J. Chem. Phys., 129:015104 (2008)

11. H. Ge and M. Qian. Boolean Network Approach to Negative Feedback Loops of the p53 Pathways: Synchronized Dynamics and Stochastic Limit Cycles.  J. Comput. Biol., 16:119-132 ,2009.

12. H. Ge and M. Qian. Theoretical analysis of the relationship between positive/negative cooperativity and enzyme activation/inhibition. Journal of Interdisciplinary Sciences: Computational Life Sciences,2009. (accepted)

 

张淑芹

1. W. Ching, S. Zhang, Y. Jiao,  et al. Optimal Control Policy for Probabilistic Boolean Networks with Hard Constraints. IET Systems Biology, 3(2):90-99, 2009.

2. S. Zhang,T. J. DeGraba,  H. Wang, et al. A Novel Peak Detection Approach with Chemical Noise Removal Using Short-Time FFT for prOTOF MS Data. Proteomics, 9, 3833-3842, 2009.

 

张云新

1. Yunxin Zhang. The Efficiency of Molecular Motors. Journal of statistical physics, 134:669–679,2009.

2. Yunxin Zhang. Properties of tug-of-war model for cargo transport by molecular motors. PHYSICAL REVIEW E,79, 061918, 2009.

3. Yunxin Zhang. Derivation of diffusion coefficient of a Brownian particle in tilted periodic potential from the coordinate moments. Physics Letters A, 373,2629-2633, 2009.

4. Yunxin Zhang . A general two-cycle network model of molecular motors. Physica A, 388:3465-3474, 2009.

 

罗若愚

1. Luo RY, Wei HB, Ye L, et al. Photosynthetic metabolism of C-3 plants shows highly cooperative regulation under changing environments: A systems biological analysis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106(3): 847—852, 2009.

2. Luo RY, Liao S, Tao GY, et al. Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions. MOLECULAR SYSTEMS BIOLOGY, 2: 2006.0031, 2006.

 

张捷

1. Xu X, Zhang J, and Small M. Superfamily phenomena of time series induced Networks. Proceedings of the National Academy of Sciences, 105: 19601—19605, 2008.

2. Zhang J and Small M. Complex network from pseudoperiodic time series: Topology vs dynamics. Physical Review Letters, 96: 238701, 2006.